treestructure: Detect Population Structure Within Phylogenetic Trees

Algorithms for detecting population structure from the history of coalescent events recorded in phylogenetic trees. This method classifies each tip and internal node of a tree into disjoint sets characterized by similar coalescent patterns. The methods are described in Volz, E., Wiuf, C., Grad, Y., Frost, S., Dennis, A., & Didelot, X. (2020) <doi:10.1093/sysbio/syaa009>.

Version: 0.1.0
Imports: ape (≥ 5.0)
LinkingTo: Rcpp
Suggests: ggtree, ggplot2, knitr
Published: 2020-02-17
DOI: 10.32614/CRAN.package.treestructure
Author: Erik Volz
Maintainer: Erik Volz <erik.volz at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
CRAN checks: treestructure results


Reference manual: treestructure.pdf
Vignettes: structuredCoalescent


Package source: treestructure_0.1.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): treestructure_0.1.0.tgz, r-oldrel (arm64): treestructure_0.1.0.tgz, r-release (x86_64): treestructure_0.1.0.tgz, r-oldrel (x86_64): treestructure_0.1.0.tgz


Please use the canonical form to link to this page.