mixIndependR: Genetics and Independence Testing of Mixed Genetic Panels

Developed to deal with multi-locus genotype data, this package is especially designed for those panel which include different type of markers. Basic genetic parameters like allele frequency, genotype frequency, heterozygosity and Hardy-Weinberg test of mixed genetic data can be obtained. In addition, a new test for mutual independence which is compatible for mixed genetic data is developed in this package.

Version: 1.0.0
Depends: R (≥ 3.6.0)
Imports: stats (≥ 3.3), utils (≥ 3.6.1), data.table
Suggests: testthat, knitr, rmarkdown, ggplot2
Published: 2021-03-17
DOI: 10.32614/CRAN.package.mixIndependR
Author: Bing Song
Maintainer: Bing Song <bing.song at utsouthwestern.edu>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://github.com/ice4prince/mixIndependR
NeedsCompilation: no
Citation: mixIndependR citation info
Materials: README NEWS
CRAN checks: mixIndependR results


Reference manual: mixIndependR.pdf
Vignettes: Basic Genetics
Distribution Building and Comparison
Hypothesis Test


Package source: mixIndependR_1.0.0.tar.gz
Windows binaries: r-devel: mixIndependR_1.0.0.zip, r-release: mixIndependR_1.0.0.zip, r-oldrel: mixIndependR_1.0.0.zip
macOS binaries: r-release (arm64): mixIndependR_1.0.0.tgz, r-oldrel (arm64): mixIndependR_1.0.0.tgz, r-release (x86_64): mixIndependR_1.0.0.tgz, r-oldrel (x86_64): mixIndependR_1.0.0.tgz
Old sources: mixIndependR archive


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