genekitr: Gene Analysis Toolkit

An analysis toolkit focused on genes. It mainly includes five features (search, convert, analysis, plot, and export). The user just needs to input feature id ('entrez', 'symbol', 'ensembl' or 'uniprot') to retrieve feature information and 'PubMed'<> records, to convert id types, to easily handle gene enrichment analysis and publication-level figures, to plot group interaction and export results as sheets in one 'excel' file to easily share and communicate with others.

Version: 1.2.5
Depends: R (≥ 3.6)
Imports: clusterProfiler, dplyr, europepmc, fst, geneset, ggplot2, ggraph, ggvenn, igraph, magrittr, openxlsx, stringr, stringi, tidyr, rlang
Suggests: AnnotationDbi, BiocManager, cowplot, ComplexUpset, data.table, fuzzyjoin, forcats, fgsea, futile.logger, ggplotify, ggsci, ggupset, ggrepel, ggridges, ggnewscale, GOplot, GOSemSim, labeling, msigdbr, pheatmap, pracma, tm, treemap, RColorBrewer, rappdirs, RCurl, reshape2, rio, rrvgo, scales, stats, testthat (≥ 3.0.0), tibble, wordcloud, knitr, rmarkdown, XML, xml2, httr
Published: 2023-09-07
Author: Yunze Liu ORCID iD [aut, cre]
Maintainer: Yunze Liu <jieandze1314 at>
License: GPL-3
NeedsCompilation: no
Materials: README ChangeLog
CRAN checks: genekitr results


Reference manual: genekitr.pdf


Package source: genekitr_1.2.5.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): genekitr_1.2.5.tgz, r-oldrel (arm64): genekitr_1.2.5.tgz, r-release (x86_64): genekitr_1.2.5.tgz
Old sources: genekitr archive


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