amanida: Meta-Analysis for Non-Integral Data

Combination of results for meta-analysis using significance and effect size only. P-values and fold-change are combined to obtain a global significance on each metabolite. Produces a volcano plot summarising the relevant results from meta-analysis. Vote-counting reports for metabolites. And explore plot to detect discrepancies between studies at a first glance. Methodology is described in the Llambrich et al. (2021) <doi:10.1093/bioinformatics/btab591>.

Version: 0.3.0
Depends: R (≥ 4.1)
Imports: dplyr (≥ 1.0.0), ggplot2 (≥ 3.3.0), ggrepel (≥ 0.9.0), kableExtra (≥ 1.3.0), knitr (≥ 1.45), magrittr (≥ 1.5), methods (≥ 3.6.0), readr (≥ 1.0.0), readxl (≥ 1.0.0), rmarkdown (≥ 2.25), stats (≥ 3.6.0), tibble (≥ 3.0.0), tidyr (≥ 1.1.0), tidyverse (≥ 1.3.0), webchem (≥ 1.1.0)
Suggests: markdown, metaboliteIDmapping, testthat, vdiffr
Published: 2024-01-26
DOI: 10.32614/CRAN.package.amanida
Author: Maria Llambrich ORCID iD [aut, cre], Eudald Correig [aut], Raquel Cumeras [aut]
Maintainer: Maria Llambrich <maria.llambrich at>
License: GPL-3
NeedsCompilation: no
Materials: README
In views: MetaAnalysis
CRAN checks: amanida results


Reference manual: amanida.pdf
Vignettes: amanida_UserGuide


Package source: amanida_0.3.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): amanida_0.3.0.tgz, r-oldrel (arm64): amanida_0.3.0.tgz, r-release (x86_64): amanida_0.3.0.tgz, r-oldrel (x86_64): amanida_0.3.0.tgz
Old sources: amanida archive


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