RPANDA: Phylogenetic ANalyses of DiversificAtion

Implements macroevolutionary analyses on phylogenetic trees. See Morlon et al. (2010) <doi:10.1371/journal.pbio.1000493>, Morlon et al. (2011) <doi:10.1073/pnas.1102543108>, Condamine et al. (2013) <doi:10.1111/ele.12062>, Morlon et al. (2014) <doi:10.1111/ele.12251>, Manceau et al. (2015) <doi:10.1111/ele.12415>, Lewitus & Morlon (2016) <doi:10.1093/sysbio/syv116>, Drury et al. (2016) <doi:10.1093/sysbio/syw020>, Manceau et al. (2016) <doi:10.1093/sysbio/syw115>, Morlon et al. (2016) <doi:10.1111/2041-210X.12526>, Clavel & Morlon (2017) <doi:10.1073/pnas.1606868114>, Drury et al. (2017) <doi:10.1093/sysbio/syx079>, Lewitus & Morlon (2017) <doi:10.1093/sysbio/syx095>, Drury et al. (2018) <doi:10.1371/journal.pbio.2003563>, Clavel et al. (2019) <doi:10.1093/sysbio/syy045>, Maliet et al. (2019) <doi:10.1038/s41559-019-0908-0>, Billaud et al. (2019) <doi:10.1093/sysbio/syz057>, Lewitus et al. (2019) <doi:10.1093/sysbio/syz061>, Aristide & Morlon (2019) <doi:10.1111/ele.13385>, Maliet et al. (2020) <doi:10.1111/ele.13592>, Drury et al. (2021) <doi:10.1371/journal.pbio.3001270>, Perez-Lamarque & Morlon (2022) <doi:10.1111/mec.16478>, Perez-Lamarque et al. (2022) <doi:10.1101/2021.08.30.458192>, Mazet et al. (2023) <doi:10.1111/2041-210X.14195>, Drury et al. (2024) <doi:10.1016/j.cub.2023.12.055>.

Version: 2.3
Depends: R (≥ 3.5.0), ape, picante, methods
Imports: BB, bipartite, cluster, coda, deSolve, fields, fpc, geiger, glassoFast, graphics, grDevices, igraph, Matrix, mvtnorm, mvMORPH (≥ 1.1.6), GUniFrac, parallel, ParallelLogger, phangorn, phytools, pracma, pspline, pvclust, raster, RColorBrewer, R.utils, Rmpfr, stats, TESS, utils, vegan
Suggests: testthat
Published: 2024-02-21
Author: Hélène Morlon [aut, cre, cph], Eric Lewitus [aut, cph], Fabien Condamine [aut, cph], Marc Manceau [aut, cph], Julien Clavel [aut, cph], Jonathan Drury [aut, cph], Olivier Billaud [aut, cph], Odile Maliet [aut, cph], Leandro Aristide [aut, cph], Benoit Perez-Lamarque [aut, cph], Nathan Mazet [aut, cph]
Maintainer: Hélène Morlon <helene.morlon at bio.ens.psl.eu>
License: GPL-2
URL: https://github.com/hmorlon/PANDA
NeedsCompilation: yes
Citation: RPANDA citation info
Materials: README
In views: Phylogenetics
CRAN checks: RPANDA results

Documentation:

Reference manual: RPANDA.pdf

Downloads:

Package source: RPANDA_2.3.tar.gz
Windows binaries: r-devel: RPANDA_2.2.zip, r-release: RPANDA_2.3.zip, r-oldrel: RPANDA_2.3.zip
macOS binaries: r-release (arm64): RPANDA_2.3.tgz, r-oldrel (arm64): RPANDA_2.3.tgz, r-release (x86_64): RPANDA_2.3.tgz
Old sources: RPANDA archive

Reverse dependencies:

Reverse suggests: nodeSub, treestats

Linking:

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