MicroNiche: Microbial Niche Measurements

Measures niche breadth and overlap of microbial taxa from large matrices. Niche breadth measurements include Levins' niche breadth (Bn) index, Hurlbert's Bn and Feinsinger's proportional similarity (PS) index. (Feinsinger, P., Spears, E.E., Poole, R.W. (1981) <doi:10.2307/1936664>). Niche overlap measurements include Levin's Overlap (Ludwig, J.A. and Reynolds, J.F. (1988, ISBN:0471832359)) and a Jaccard similarity index of Feinsinger's PS values between taxa pairs, as Proportional Overlap.

Version: 1.0.0
Depends: ggplot2, reshape2, stats
Published: 2020-01-30
DOI: 10.32614/CRAN.package.MicroNiche
Author: Damien Finn [aut, cre]
Maintainer: Damien Finn <damien.finn at uqconnect.edu.au>
License: GPL-2
NeedsCompilation: no
CRAN checks: MicroNiche results


Reference manual: MicroNiche.pdf


Package source: MicroNiche_1.0.0.tar.gz
Windows binaries: r-devel: MicroNiche_1.0.0.zip, r-release: MicroNiche_1.0.0.zip, r-oldrel: MicroNiche_1.0.0.zip
macOS binaries: r-release (arm64): MicroNiche_1.0.0.tgz, r-oldrel (arm64): MicroNiche_1.0.0.tgz, r-release (x86_64): MicroNiche_1.0.0.tgz, r-oldrel (x86_64): MicroNiche_1.0.0.tgz


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