ML.MSBD: Maximum Likelihood Inference on Multi-State Trees

Inference of a multi-states birth-death model from a phylogeny, comprising a number of states N, birth and death rates for each state and on which edges each state appears. Inference is done using a hybrid approach: states are progressively added in a greedy approach. For a fixed number of states N the best model is selected via maximum likelihood. Reference: J. Barido-Sottani, T. G. Vaughan and T. Stadler (2018) <doi:10.1098/rsif.2018.0512>.

Version: 1.2.1
Imports: ape (≥ 5.1), foreach
Suggests: knitr, rmarkdown, doParallel
Published: 2021-04-16
DOI: 10.32614/CRAN.package.ML.MSBD
Author: Joelle Barido-Sottani [aut, cre]
Maintainer: Joelle Barido-Sottani <joelle.barido-sottani at>
License: GPL-3
NeedsCompilation: no
Materials: NEWS
CRAN checks: ML.MSBD results


Reference manual: ML.MSBD.pdf
Vignettes: Using ML.MSBD


Package source: ML.MSBD_1.2.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): ML.MSBD_1.2.1.tgz, r-oldrel (arm64): ML.MSBD_1.2.1.tgz, r-release (x86_64): ML.MSBD_1.2.1.tgz, r-oldrel (x86_64): ML.MSBD_1.2.1.tgz
Old sources: ML.MSBD archive


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