CRAN Package Check Results for Package dartR

Last updated on 2024-04-19 01:04:28 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.9.7 95.61 789.13 884.74 NOTE
r-devel-linux-x86_64-debian-gcc 2.9.7 72.72 551.00 623.72 NOTE
r-devel-linux-x86_64-fedora-clang 2.9.7 1117.11 NOTE
r-devel-linux-x86_64-fedora-gcc 2.9.7 1090.70 NOTE
r-prerel-macos-arm64 2.9.7 237.00 NOTE
r-prerel-macos-x86_64 2.9.7 473.00 NOTE
r-prerel-windows-x86_64 2.9.7 73.00 568.00 641.00 NOTE
r-patched-linux-x86_64 2.9.7 97.42 733.78 831.20 NOTE
r-release-linux-x86_64 2.9.7 68.57 752.91 821.48 OK
r-release-macos-arm64 2.9.7 250.00 NOTE
r-release-macos-x86_64 2.9.7 569.00 OK
r-release-windows-x86_64 2.9.7 100.00 768.00 868.00 OK
r-oldrel-macos-arm64 2.9.7 250.00 OK
r-oldrel-windows-x86_64 2.9.7 72.00 706.00 778.00 ERROR

Check Details

Version: 2.9.7
Check: Rd files
Result: NOTE checkRd: (-1) gl.filter.maf.Rd:7: Lost braces; missing escapes or markup? 7 | {adegenet} object} | ^ checkRd: (-1) gl.pcoa.Rd:68: Lost braces; missing escapes or markup? 68 | The function is essentially a wrapper for glPca {adegenet} or pcoa \{ape\} | ^ checkRd: (-1) gl.play.history.Rd:17: Lost braces 17 | code{x2@other$history[c(1,4,5)]}). [optional].} | ^ checkRd: (-1) utils.jackknife.Rd:49: Lost braces 49 | bold{Note} that when n is very small, jackknife resampling is not recommended. | ^ checkRd: (-1) utils.jackknife.Rd:51: Lost braces 51 | Parallel computation is implemented. The argument code{n.cores} indicates the | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-prerel-macos-arm64, r-prerel-windows-x86_64, r-patched-linux-x86_64

Version: 2.9.7
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘snpStats’ Flavors: r-prerel-macos-x86_64, r-release-macos-arm64

Version: 2.9.7
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘snpStats’ Flavors: r-prerel-macos-x86_64, r-release-macos-arm64

Version: 2.9.7
Check: examples
Result: ERROR Running examples in 'dartR-Ex.R' failed The error most likely occurred in: > ### Name: gl.pcoa.plot > ### Title: Bivariate or trivariate plot of the results of an ordination > ### generated using gl.pcoa() > ### Aliases: gl.pcoa.plot > > ### ** Examples > > test <- gl.pcoa(platypus.gl) Starting gl.pcoa Processing genlight object with SNP data Warning: data include loci that are scored NA across all individuals. Consider filtering using gl <- gl.filter.allna(gl) Performing a PCA, individuals as entities, loci as attributes, SNP genotype as state Flavor: r-oldrel-windows-x86_64