CRAN Package Check Results for Package JGL

Last updated on 2024-06-23 08:51:11 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.3.2 5.27 43.97 49.24 ERROR
r-devel-linux-x86_64-debian-gcc 2.3.2 3.82 33.83 37.65 OK
r-devel-linux-x86_64-fedora-clang 2.3.2 61.97 OK
r-devel-linux-x86_64-fedora-gcc 2.3.2 59.26 OK
r-devel-windows-x86_64 2.3.2 5.00 54.00 59.00 OK
r-patched-linux-x86_64 2.3.2 4.29 44.68 48.97 OK
r-release-linux-x86_64 2.3.2 3.34 42.64 45.98 OK
r-release-macos-arm64 2.3.2 22.00 OK
r-release-macos-x86_64 2.3.2 42.00 OK
r-release-windows-x86_64 2.3.2 5.00 54.00 59.00 OK
r-oldrel-macos-arm64 2.3.2 28.00 OK
r-oldrel-macos-x86_64 2.3.2 50.00 OK
r-oldrel-windows-x86_64 2.3.2 6.00 62.00 68.00 OK

Check Details

Version: 2.3.2
Check: examples
Result: ERROR Running examples in ‘JGL-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: net.edges > ### Title: List the edges in a network > ### Aliases: net.edges > > ### ** Examples > > ## load an example dataset with K=two classes, p=200 features, and n=100 samples per class: > data(example.data) > str(example.data) List of 2 $ : num [1:100, 1:200] 0.395 -2.03 -1.704 -0.469 1.75 ... ..- attr(*, "dimnames")=List of 2 .. ..$ : NULL .. ..$ : chr [1:200] "gene 1" "gene 2" "gene 3" "gene 4" ... $ : num [1:100, 1:200] -1.548 1.45 -0.812 -0.589 0.69 ... ..- attr(*, "dimnames")=List of 2 .. ..$ : NULL .. ..$ : chr [1:200] "gene 1" "gene 2" "gene 3" "gene 4" ... > ## run fgl: > fgl.results = JGL(Y=example.data,penalty="fused",lambda1=.25,lambda2=.1) > ## get edges list: > net.edges(fgl.results$theta) [[1]] Error in gsize(x) : At vendor/cigraph/src/core/vector.pmt:515 : Assertion failed: v->stor_begin != NULL. This is an unexpected igraph error; please report this as a bug, along with the steps to reproduce it. Please restart your R session to avoid crashes or other surprising behavior. Calls: <Anonymous> ... stopifnot -> %+% -> stopifnot -> %+% -> stopifnot -> gsize Execution halted Flavor: r-devel-linux-x86_64-debian-clang