Last updated on 2024-09-13 23:48:15 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.7.1 | 9.45 | 548.67 | 558.12 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.7.1 | 5.17 | 386.24 | 391.41 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.7.1 | 938.00 | OK | |||
| r-devel-windows-x86_64 | 0.7.1 | 13.00 | 359.00 | 372.00 | OK | |
| r-patched-linux-x86_64 | 0.7.1 | 9.21 | 505.25 | 514.46 | OK | |
| r-release-linux-x86_64 | 0.7.1 | 8.86 | 499.30 | 508.16 | ERROR | |
| r-release-macos-arm64 | 0.7.1 | 166.00 | OK | |||
| r-release-macos-x86_64 | 0.7.1 | 314.00 | OK | |||
| r-release-windows-x86_64 | 0.7.1 | 15.00 | 359.00 | 374.00 | OK | |
| r-oldrel-macos-arm64 | 0.7.1 | 10.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 0.7.1 | 12.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 0.7.1 | 15.00 | 391.00 | 406.00 | OK |
Version: 0.7.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘flextable’
Flavor: r-release-linux-x86_64
Version: 0.7.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘create_cohorts.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/DrugUtilisation.Rcheck/vign_test/DrugUtilisation/vignettes/create_cohorts_files/figure-html/unnamed-chunk-9-1.png
672x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24762 bytes
Input file size = 24876 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20566
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20566
Output IDAT size = 20566 bytes (4196 bytes decrease)
Output file size = 20644 bytes (4232 bytes = 17.01% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/DrugUtilisation.Rcheck/vign_test/DrugUtilisation/vignettes/create_cohorts_files/figure-html/unnamed-chunk-10-1.png
672x192 pixels, 8 bits/pixel, 212 colors in palette
Input IDAT size = 3638 bytes
Input file size = 4364 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3050
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3032
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3032
Output IDAT size = 3032 bytes (606 bytes decrease)
Output file size = 3758 bytes (606 bytes = 13.89% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/DrugUtilisation.Rcheck/vign_test/DrugUtilisation/vignettes/create_cohorts_files/figure-html/unnamed-chunk-11-1.png
672x192 pixels, 8 bits/pixel, 212 colors in palette
Input IDAT size = 3617 bytes
Input file size = 4343 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3032
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3011
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3011
Output IDAT size = 3011 bytes (606 bytes decrease)
Output file size = 3737 bytes (606 bytes = 13.95% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/DrugUtilisation.Rcheck/vign_test/DrugUtilisation/vignettes/create_cohorts_files/figure-html/unnamed-chunk-12-1.png
672x192 pixels, 8 bits/pixel, 212 colors in palette
Input IDAT size = 3563 bytes
Input file size = 4289 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2989
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2969
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2969
Output IDAT size = 2969 bytes (594 bytes decrease)
Output file size = 3695 bytes (594 bytes = 13.85% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/DrugUtilisation.Rcheck/vign_test/DrugUtilisation/vignettes/create_cohorts_files/figure-html/unnamed-chunk-42-1.png
672x192 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11056 bytes
Input file size = 11146 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8629
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8629
Output IDAT size = 8629 bytes (2427 bytes decrease)
Output file size = 8707 bytes (2439 bytes = 21.88% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/DrugUtilisation.Rcheck/vign_test/DrugUtilisation/vignettes/create_cohorts_files/figure-html/unnamed-chunk-43-1.png
672x192 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 7942 bytes
Input file size = 8020 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6505
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6505
Output IDAT size = 6505 bytes (1437 bytes decrease)
Output file size = 6583 bytes (1437 bytes = 17.92% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/DrugUtilisation.Rcheck/vign_test/DrugUtilisation/vignettes/create_cohorts_files/figure-html/unnamed-chunk-44-1.png
672x192 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 7940 bytes
Input file size = 8018 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6533
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6533
Output IDAT size = 6533 bytes (1407 bytes decrease)
Output file size = 6611 bytes (1407 bytes = 17.55% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/DrugUtilisation.Rcheck/vign_test/DrugUtilisation/vignettes/create_cohorts_files/figure-html/unnamed-chunk-45-1.png
672x192 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 7777 bytes
Input file size = 7855 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6351
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6351
Output IDAT size = 6351 bytes (1426 bytes decrease)
Output file size = 6429 bytes (1426 bytes = 18.15% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/DrugUtilisation.Rcheck/vign_test/DrugUtilisation/vignettes/create_cohorts_files/figure-html/unnamed-chunk-46-1.png
672x192 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 7789 bytes
Input file size = 7867 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6381
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6381
Output IDAT size = 6381 bytes (1408 bytes decrease)
Output file size = 6459 bytes (1408 bytes = 17.90% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/DrugUtilisation.Rcheck/vign_test/DrugUtilisation/vignettes/create_cohorts_files/figure-html/unnamed-chunk-47-1.png
672x192 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 7432 bytes
Input file size = 7510 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6162
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6162
Output IDAT size = 6162 bytes (1270 bytes decrease)
Output file size = 6240 bytes (1270 bytes = 16.91% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/DrugUtilisation.Rcheck/vign_test/DrugUtilisation/vignettes/create_cohorts_files/figure-html/unnamed-chunk-48-1.png
672x192 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 7445 bytes
Input file size = 7523 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6182
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6182
Output IDAT size = 6182 bytes (1263 bytes decrease)
Output file size = 6260 bytes (1263 bytes = 16.79% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/DrugUtilisation.Rcheck/vign_test/DrugUtilisation/vignettes/create_cohorts_files/figure-html/unnamed-chunk-49-1.png
672x192 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 7940 bytes
Input file size = 8018 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6533
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6533
Output IDAT size = 6533 bytes (1407 bytes decrease)
Output file size = 6611 bytes (1407 bytes = 17.55% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/DrugUtilisation.Rcheck/vign_test/DrugUtilisation/vignettes/create_cohorts_files/figure-html/unnamed-chunk-50-1.png
672x192 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8705 bytes
Input file size = 8795 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7098
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7098
Output IDAT size = 7098 bytes (1607 bytes decrease)
Output file size = 7176 bytes (1619 bytes = 18.41% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/DrugUtilisation.Rcheck/vign_test/DrugUtilisation/vignettes/create_cohorts_files/figure-html/unnamed-chunk-51-1.png
672x192 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8332 bytes
Input file size = 8422 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6889
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6889
Output IDAT size = 6889 bytes (1443 bytes decrease)
Output file size = 6967 bytes (1455 bytes = 17.28% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/DrugUtilisation.Rcheck/vign_test/DrugUtilisation/vignettes/create_cohorts_files/figure-html/unnamed-chunk-52-1.png
672x192 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8356 bytes
Input file size = 8446 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6922
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6922
Output IDAT size = 6922 bytes (1434 bytes decrease)
Output file size = 7000 bytes (1446 bytes = 17.12% decrease)
--- finished re-building ‘create_cohorts.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘drug_utilisation.Rmd’ using rmarkdown
Quitting from lines 283-299 [unnamed-chunk-10] (drug_utilisation.Rmd)
Error: processing vignette 'drug_utilisation.Rmd' failed with diagnostics:
The package "flextable" is required.
--- failed re-building ‘drug_utilisation.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
SUMMARY: processing the following file failed:
‘drug_utilisation.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.7.1
Check: package dependencies
Result: ERROR
Packages required and available but unsuitable versions:
'CodelistGenerator', 'omopgenerics'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64