mecoturn: Decipher Microbial Turnover along a Gradient

Two pipelines are provided to study microbial turnover along a gradient, including the beta diversity and microbial abundance change. The 'betaturn' class consists of the steps of community dissimilarity matrix generation, matrix conversion, differential test and visualization. The workflow of 'taxaturn' class includes the taxonomic abundance calculation, abundance transformation, abundance change summary, statistical analysis and visualization. Multiple statistical approaches can contribute to the analysis of microbial turnover.

Version: 0.3.0
Depends: R (≥ 3.5.0)
Imports: R6, ggplot2 (≥ 3.4.0), microeco (≥ 0.20.0), GUniFrac, magrittr, ggpubr, lmerTest, betareg, glmmTMB
Suggests: ape, agricolae
Published: 2023-09-10
DOI: 10.32614/CRAN.package.mecoturn
Author: Chi Liu [aut, cre], Xiangzhen Li [ctb], Minjie Yao [ctb]
Maintainer: Chi Liu <liuchi0426 at>
License: GPL-3
NeedsCompilation: no
Citation: mecoturn citation info
CRAN checks: mecoturn results


Reference manual: mecoturn.pdf


Package source: mecoturn_0.3.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): mecoturn_0.3.0.tgz, r-oldrel (arm64): mecoturn_0.3.0.tgz, r-release (x86_64): mecoturn_0.3.0.tgz, r-oldrel (x86_64): mecoturn_0.3.0.tgz
Old sources: mecoturn archive


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