calmate: Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation

A multi-array post-processing method of allele-specific copy-number estimates (ASCNs).

Version: 0.12.0
Depends: R (≥ 3.0.3), R.utils (≥ 1.34.0), aroma.core (≥ 2.13.0)
Imports: utils, MASS, R.methodsS3 (≥ 1.7.0), R.oo (≥ 1.18.0), matrixStats (≥ 0.14.0), R.filesets (≥ 2.7.0)
Suggests: DNAcopy
Published: 2015-02-23
Author: Maria Ortiz [aut, ctb], Ander Aramburu [ctb], Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [aut, ctb], Angel Rubio [aut, ctb]
Maintainer: Henrik Bengtsson <henrikb at>
License: LGPL-2.1 | LGPL-3 [expanded from: LGPL (≥ 2.1)]
NeedsCompilation: no
Materials: NEWS
CRAN checks: calmate results


Reference manual: calmate.pdf
Package source: calmate_0.12.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X Snow Leopard binaries: r-release: calmate_0.12.0.tgz, r-oldrel: calmate_0.11.0.tgz
OS X Mavericks binaries: r-release: calmate_0.12.0.tgz
Old sources: calmate archive