SNPassoc: SNPs-based whole genome association studies

This package carries out most common analysis when performing whole genome association studies. These analyses include descriptive statistics and exploratory analysis of missing values, calculation of Hardy-Weinberg equilibrium, analysis of association based on generalized linear models (either for quantitative or binary traits), and analysis of multiple SNPs (haplotype and epistasis analysis). Permutation test and related tests (sum statistic and truncated product) are also implemented. Max-statistic and genetic risk-allele score exact distributions are also possible to be estimated.

Version: 1.9-2
Depends: R (≥ 3.0.0), haplo.stats, survival, mvtnorm, parallel
Published: 2014-04-23
Author: Juan R González, Lluís Armengol, Elisabet Guinó, Xavier Solé, and Víctor Moreno
Maintainer: Juan R González <jrgonzalez at creal.cat>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: http://www.creal.cat/jrgonzalez/software.htm
NeedsCompilation: no
CRAN checks: SNPassoc results

Downloads:

Reference manual: SNPassoc.pdf
Package source: SNPassoc_1.9-2.tar.gz
OS X binary: SNPassoc_1.9-1.tgz
Windows binary: SNPassoc_1.9-1.zip
Old sources: SNPassoc archive

Reverse dependencies:

Reverse depends: compareGroups