CRAN Package Check Results for Package lme4

Last updated on 2017-12-18 00:46:59 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-14 72.47 760.57 833.04 OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang 1.1-14 933.19 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1-14 1063.61 NOTE
r-devel-windows-ix86+x86_64 1.1-14 153.00 1405.00 1558.00 FAIL
r-patched-linux-x86_64 1.1-14 76.27 454.20 530.47 ERROR
r-patched-solaris-x86 1.1-14 1187.30 ERROR
r-release-linux-x86_64 1.1-14 73.11 453.91 527.02 ERROR
r-release-windows-ix86+x86_64 1.1-14 139.00 1381.00 1520.00 NOTE
r-release-osx-x86_64 1.1-14 NOTE
r-oldrel-windows-ix86+x86_64 1.1-14 206.00 799.00 1005.00 NOTE
r-oldrel-osx-x86_64 1.1-14 NOTE

Check Details

Version: 1.1-14
Check: installed package size
Result: NOTE
     installed size is 27.0Mb
     sub-directories of 1Mb or more:
     doc 1.5Mb
     libs 21.9Mb
     testdata 1.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.1-14
Check: re-building of vignette outputs
Result: FAIL
    Check process probably crashed or hung up for 20 minutes ... killed
    Most likely this happened in the example checks (?),
    if not, ignore the following last lines of example output:
    
    ======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-devel-windows-ix86+x86_64

Version: 1.1-14
Check: tests
Result: ERROR
     Running ‘AAAtest-all.R’ [197s/252s]
    Running the tests in ‘tests/AAAtest-all.R’ failed.
    Complete output:
     > if(require("testthat", quietly = TRUE)) {
     + pkg <- "lme4"
     + require(pkg, character.only=TRUE, quietly=TRUE)
     + test_check(pkg)
     + print(warnings()) # TODO? catch most of these by expect_warning(..)
     + } else {
     + cat( "package 'testthat' not available, cannot run unit tests\n" )
     + }
     ── 1. Error: basic intercept + slope '||' works (@test-doubleVertNotation.R#7)
     argument is missing, with no default
     1: expect_equivalent(lFormula(Reaction ~ Days + (Days || Subject), sleepstudy)$reTrms,
     lFormula(Reaction ~ Days + (1 | Subject) + (0 + Days | Subject), sleepstudy)$reTrms,
     ) at testthat/test-doubleVertNotation.R:7
     2: compare(act$val, exp$val, ..., check.attributes = FALSE)
     3: compare.default(act$val, exp$val, ..., check.attributes = FALSE)
     4: all.equal(x, y, ...)
     5: all.equal.list(x, y, ...)
     6: all.equal(target[[i]], current[[i]], check.attributes = check.attributes, use.names = use.names,
     ...)
     7: all.equal.numeric(target[[i]], current[[i]], check.attributes = check.attributes,
     use.names = use.names, ...)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 731 SKIPPED: 1 FAILED: 1
     1. Error: basic intercept + slope '||' works (@test-doubleVertNotation.R#7)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 1.1-14
Check: tests
Result: ERROR
     Running ‘AAAtest-all.R’ [239s/239s]
     Running ‘HSAURtrees.R’
     Running ‘REMLdev.R’
     Running ‘ST.R’
     Running ‘agridat_gotway.R’
     Running ‘bootMer.R’ [12s/12s]
     Running ‘boundary.R’ [17s/17s]
     Running ‘condVar.R’
     Running ‘confint.R’
     Running ‘devCritFun.R’
     Running ‘devfunQ.R’
     Running ‘drop.R’
     Running ‘drop1contrasts.R’
     Running ‘dynload.R’
     Running ‘elston.R’
     Running ‘evalCall.R’
     Running ‘extras.R’
     Running ‘falsezero_dorie.R’
     Running ‘fewlevels.R’ [35s/35s]
     Running ‘getME.R’
     Running ‘glmer-1.R’
     Running ‘glmerControlPass.R’ [22s/22s]
     Running ‘glmerWarn.R’
     Running ‘glmmExt.R’ [18s/18s]
     Running ‘glmmWeights.R’ [17s/17s]
     Running ‘hatvalues.R’
     Running ‘is.R’
     Running ‘lmList-tst.R’
     Running ‘lme4_nlme.R’
     Running ‘lmer-0.R’
     Running ‘lmer-1.R’ [10s/10s]
     Comparing ‘lmer-1.Rout’ to ‘lmer-1.Rout.save’ ... OK
     Running ‘lmer-conv.R’
     Running ‘lmer2_ex.R’
     Running ‘methods.R’
     Running ‘minval.R’
     Running ‘modFormula.R’
     Running ‘nbinom.R’
     Running ‘nlmer-conv.R’
     Running ‘nlmer.R’
     Comparing ‘nlmer.Rout’ to ‘nlmer.Rout.save’ ... OK
     Running ‘offset.R’
     Running ‘optimizer.R’ [11s/11s]
     Running ‘polytomous.R’
     Running ‘prLogistic.R’
     Running ‘predict.R’
     Running ‘predict_basis.R’
     Running ‘predsim.R’
     Running ‘priorWeights.R’ [15s/15s]
     Running ‘priorWeightsModComp.R’
     Running ‘profile-tst.R’ [52s/45s]
     Running ‘refit.R’ [37s/37s]
     Running ‘resids.R’
     Running ‘respiratory.R’ [16s/17s]
     Running ‘simulate.R’ [11s/11s]
     Running ‘testOptControl.R’
     Running ‘test_times.R’
     Running ‘testcolonizer.R’
     Running ‘testcrab.R’ [16s/17s]
     Running ‘throw.R’ [12s/12s]
     Running ‘utils.R’
     Running ‘varcorr.R’
     Running ‘vcov-etc.R’
    Running the tests in ‘tests/AAAtest-all.R’ failed.
    Complete output:
     > if(require("testthat", quietly = TRUE)) {
     + pkg <- "lme4"
     + require(pkg, character.only=TRUE, quietly=TRUE)
     + test_check(pkg)
     + print(warnings()) # TODO? catch most of these by expect_warning(..)
     + } else {
     + cat( "package 'testthat' not available, cannot run unit tests\n" )
     + }
     ── 1. Error: basic intercept + slope '||' works (@test-doubleVertNotation.R#7)
     argument is missing, with no default
     1: expect_equivalent(lFormula(Reaction ~ Days + (Days || Subject), sleepstudy)$reTrms,
     lFormula(Reaction ~ Days + (1 | Subject) + (0 + Days | Subject), sleepstudy)$reTrms,
     ) at testthat/test-doubleVertNotation.R:7
     2: compare(act$val, exp$val, ..., check.attributes = FALSE)
     3: compare.default(act$val, exp$val, ..., check.attributes = FALSE)
     4: all.equal(x, y, ...)
     5: all.equal.list(x, y, ...)
     6: all.equal(target[[i]], current[[i]], check.attributes = check.attributes, use.names = use.names,
     ...)
     7: all.equal.numeric(target[[i]], current[[i]], check.attributes = check.attributes,
     use.names = use.names, ...)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 728 SKIPPED: 1 FAILED: 1
     1. Error: basic intercept + slope '||' works (@test-doubleVertNotation.R#7)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86

Version: 1.1-14
Check: tests
Result: ERROR
     Running ‘AAAtest-all.R’ [195s/251s]
    Running the tests in ‘tests/AAAtest-all.R’ failed.
    Complete output:
     > if(require("testthat", quietly = TRUE)) {
     + pkg <- "lme4"
     + require(pkg, character.only=TRUE, quietly=TRUE)
     + test_check(pkg)
     + print(warnings()) # TODO? catch most of these by expect_warning(..)
     + } else {
     + cat( "package 'testthat' not available, cannot run unit tests\n" )
     + }
     ── 1. Error: basic intercept + slope '||' works (@test-doubleVertNotation.R#7)
     argument is missing, with no default
     1: expect_equivalent(lFormula(Reaction ~ Days + (Days || Subject), sleepstudy)$reTrms,
     lFormula(Reaction ~ Days + (1 | Subject) + (0 + Days | Subject), sleepstudy)$reTrms,
     ) at testthat/test-doubleVertNotation.R:7
     2: compare(act$val, exp$val, ..., check.attributes = FALSE)
     3: compare.default(act$val, exp$val, ..., check.attributes = FALSE)
     4: all.equal(x, y, ...)
     5: all.equal.list(x, y, ...)
     6: all.equal(target[[i]], current[[i]], check.attributes = check.attributes, use.names = use.names,
     ...)
     7: all.equal.numeric(target[[i]], current[[i]], check.attributes = check.attributes,
     use.names = use.names, ...)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 731 SKIPPED: 1 FAILED: 1
     1. Error: basic intercept + slope '||' works (@test-doubleVertNotation.R#7)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-linux-x86_64

Version: 1.1-14
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Warning in test_latex_pkg("framed", system.file("misc", "framed.sty", package = "knitr")) :
     unable to find LaTeX package 'framed'; will use a copy from knitr
    Loading required package: Matrix
    Computing profile confidence intervals ...
    Warning in if (parm == "theta_") { :
     the condition has length > 1 and only the first element will be used
    Warning in if (parm == "beta_") { :
     the condition has length > 1 and only the first element will be used
    Computing bootstrap confidence intervals ...
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'lmer.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `blkarray.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.62 \usepackage
     {array}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64

Version: 1.1-14
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
     input string 785 is invalid in this locale
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'lmer.tex' failed.
    LaTeX errors:
    ! Undefined control sequence.
    l.15 x<9c><ed>\Mh
     ^^TK^^P<ae><97>(q$<ee>؈!.L6^^L/($oYX^^Hx^^H<eb>!<a0>'o<de><<eb>ٓ^^A/<a2>O<f0>]ċ^^G<f5>^^]<84><e7>A...
    The control sequence at the end of the top line
    of your error message was never \def'ed. If you have
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Missing $ inserted.
    <inserted text>
     $
    l.16 ...F<a0><ba>v<ed>Zggg<ad>V{<fd><fa>5^^Q9<8e>388866<a6><94><8a><e3>^^X<fd>^^]<c7><c1><83><ae>^
     <bd><9a>J<a5>l<db>v^^\^^G<9f>J<a9><87>^^O^^_<c6>q|...
    ! Extra }, or forgotten $.
    l.17 Ԓ<da>[}
     <b8>ӄ<f6><a0><9c>0^^L<89>(<9b><cd><e2>^^A<98><ce>0^^L<0b><85>^^BOm<b9>\^^^^^Z^^Z<8a><a2><88><a7>?<9b><cd>"@a<ce>0<8e>eYP{<a1>P<c0>O<<c8><e3>...
    I've deleted a group-closing
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-oldrel-osx-x86_64